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  Author    Peptidomics  (currently 7,784 views)
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Posted on: November 27th, 2007, 4:11pm Quote Report to Moderator
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Posts: 221
Ghosh PS, Han G, Erdogan B, Rosado O, Rotello VM  
Binding of nanoparticle receptors to peptide alpha-helices using amino acid-functionalized nanoparticles.
J Pept Sci. 2007 Nov 1;.
PMID: 17973336 [PubMed - Publisher]

Montes-Nieto R, Fuentes-Almagro CA, Bonilla-Valverde D, Prieto-Alamo MJ, Jurado J, Carrascal M, Gomez-Ariza JL, Lopez-Barea J, Pueyo C  
Proteomics in free-living Mus spretus to monitor terrestrial ecosystems.
Proteomics. 2007 Oct 31;.
PMID: 17973291 [PubMed - Publisher]

Nissum M, Kuhfuss S, Hauptmann M, Obermaier C, Sukop U, Wildgruber R, Weber G, Eckerskorn C, Malmstrom J  
Two-dimensional separation of human plasma proteins using iterative free-flow electrophoresis.
Proteomics. 2007 Oct 31;.
PMID: 17973290 [PubMed - Publisher]

Hu S, Wang J, Meijer J, Ieong S, Xie Y, Yu T, Zhou H, Henry S, Vissink A, Pijpe J, Kallenberg C, Elashoff D, Loo JA, Wong DT  
Salivary proteomic and genomic biomarkers for primary Sjogren's syndrome.
Arthritis Rheum. 2007 Oct 29;56(11):3588-3600.

Wu J, Liu W, Bemis A, Wang E, Qiu Y, Morris EA, Flannery CR, Yang Z  
Comparative proteomic characterization of articular cartilage tissue from normal donors and patients with osteoarthritis.
Arthritis Rheum. 2007 Oct 29;56(11):3675-3684.

Heo SH, Lee SJ, Ryoo HM, Park JY, Cho JY  
Identification of putative serum glycoprotein biomarkers for human lung adenocarcinoma by multilectin affinity chromatography and LC-MS/MS.
Proteomics. 2007 Oct 29;.
PMID: 17963278 [PubMed - Publisher]

Crawford FC, Wood M, Ferguson S, Mathura VS, Faza B, Wilson S, Fan T, O'Steen B, Ait-Ghezala G, Hayes R, Mullan MJ  
Genomic analysis of response to traumatic brain injury in a mouse model of Alzheimer's disease (APPsw).
Brain Res. 2007 Sep 25;.
PMID: 17961517 [PubMed - Publisher]

Weerasekera R, She YM, Markham KA, Bai Y, Opalka N, Orlicky S, Sicheri F, Kislinger T, Schmitt-Ulms G  
Interactome and interface protocol (2IP): A novel strategy for high sensitivity topology mapping of protein complexes.
Proteomics. 2007 Nov;7(21):3835-52.

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Posts: 221
Bridges SM, Magee GB, Wang N, Williams WP, Burgess SC, Nanduri B  
ProtQuant: a tool for the label-free quantification of MudPIT proteomics data.
BMC Bioinformatics. 2007 Nov 1;8 Suppl 7:S24.

Schaumloffel D  
New ways in qualitative and quantitative protein analysis: Nano chromatography coupled to element mass spectrometry.
J Trace Elem Med Biol. 2007;21 Suppl 1:18-22. Epub 2007 Oct 29.

Tiss A, Smith C, Camuzeaux S, Kabir M, Gayther S, Menon U, Waterfield M, Timms J, Jacobs I, Cramer R  
Serum Peptide Profiling using MALDI Mass Spectrometry: avoiding the Pitfalls of Coated Magnetic Beads using Well-established ZipTip Technology.
Proteomics. 2007 Sep;7 Suppl 1:77-89.
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Posts: 221
Jutras I, Houde M, Currier N, Boulais J, Duclos S, Laboissiere S, Bonneil E, Kearney P, Thibault P, Paramithiotis E, Hugo P, Desjardins M  
Modulation of the phagosome proteome by interferon-gamma.
Mol Cell Proteomics. 2007 Dec 21;.
PMID: 18156134 [PubMed - Publisher]


Zolotarjova N, Mrozinski P, Chen H, Martosella J  
Combination of affinity depletion of abundant proteins and reversed-phase fractionation in proteomic analysis of human plasma/serum.
J Chromatogr A. 2007 Dec 4;.
PMID: 18154976 [PubMed - Publisher]

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Posts: 221
Riding GA, Jones A, Holland MK, Hill JR, Lehnert SA  
 Proteomic analysis of bovine conceptus fluids during early pregnancy.
Proteomics. 2007 Dec 19;8(1):160-177.
PMID: 18095355 [PubMed - Publisher]

Ulve VM, Sevin EW, Cheron A, Barloy-Hubler F  
Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021.
BMC Genomics. 2007 Dec 19;8(1):467.
PMID: 18093320 [PubMed - Publisher]

Marquez-Quinones A, Paris A, Roussel B, Perez-Carreon J, Le Berre V, Francois JM, Villa-Trevino S, Gueraud F  
Proteasome Activity Deregulation in LEC Rat Hepatitis: Following the Insights of Transcriptomic Analysis.
OMICS. 2007 Winter;11(4):367-84.
PMID: 18092909 [PubMed - In-Data-Review]

Higdon R, Hogan JM, Kolker N, van Belle G, Kolker E  
Experiment-specific estimation of Peptide identification probabilities using a randomized database.
OMICS. 2007 Winter;11(4):351-66.
PMID: 18092908 [PubMed - In-Data-Review]

Metz TO, Qian WJ, Jacobs JM, Gritsenko MA, Moore RJ, Polpitiya AD, Monroe ME, Camp Ii DG, Mueller PW, Smith RD  
Application of Proteomics in the Discovery of Candidate Protein Biomarkers in a Diabetes Autoantibody Standardization Program Sample Subset.
J Proteome Res. 2007 Dec 20;.
PMID: 18092746 [PubMed - Publisher]

Mirzaei H, McBee J, Watts J, Aebersold R  
Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics.
Mol Cell Proteomics. 2007 Dec 17;.
PMID: 18089551 [PubMed - Publisher]

Galan JA, Guo M, Sanchez EE, Cantu E, Rodriguez-Acosta A, Perez JC, Tao WA  
Quantitative analysis of snake venoms using soluble polymer-based isotope labeling.
Mol Cell Proteomics. 2007 Dec 18;.
PMID: 18089550 [PubMed - Publisher]

Alvarez S, Marsh EL, Schroeder SG, Schachtman DP  
Metabolomic and Proteomic Changes in the Xylem Sap of Maize under Drought.
Plant Cell Environ. 2007 Dec 10;.
PMID: 18088330 [PubMed - Publisher]

Xu X, Yang H, Ma D, Wu J, Wang Y, Song Y, Wang X, Lu Y, Yang J, Lai R  
Toward an understanding of the molecular mechanism for successfully blood-feeding by proteomics analysis coupling with pharmacological testing of horse fly salivary glands.
Mol Cell Proteomics. 2007 Dec 17;.
PMID: 18087067 [PubMed - Publisher]

Panchaud A, Hansson J, Affolter M, Bel Rhlid R, Piu S, Moreillon P, Kussmann M  
ANIBAL - Stable-isotope-based quantitative proteomics by ANIline and Benzoic acid labeling of amino and carboxylic groups.
Mol Cell Proteomics. 2007 Dec 13;.
PMID: 18083701 [PubMed - Publisher]

Tharntada S, Somboonwiwat K, Rimphanitchayakit V, Tassanakajon A  
Anti-lipopolysaccharide factors from the black tiger shrimp, Penaeus monodon, are encoded by two genomic loci.
Fish Shellfish Immunol. 2007 Oct 5;.
PMID: 18083045 [PubMed - Publisher]

Li Y, Lin H, Deng C, Yang P, Zhang X  
Highly selective and rapid enrichment of phosphorylated peptides using gallium oxide-coated magnetic microspheres for MALDI-TOF-MS and nano-LC-ESI-MS/MS/MS analysis.
Proteomics. 2007 Dec 17;.
PMID: 18081192 [PubMed - Publisher]

Zamora DO, Riviere M, Choi D, Pan Y, Planck SR, Rosenbaum JT, David LL, Smith JR
Proteomic profiling of human retinal and choroidal endothelial cells reveals molecular heterogeneity related to tissue of origin.
Mol Vis. 2007 Oct 30;13:2058-65.
PMID: 18079679 [PubMed - In-Process]

Price CJ, Hoyda TD, Ferguson AV  
The Area Postrema: A Brain Monitor and Integrator of Systemic Autonomic State.
Neuroscientist. 2007 Dec 13;.
PMID: 18079557 [PubMed - Publisher]

Farrokhi CB, Tovote P, Blanchard RJ, Blanchard DC, Litvin Y, Spiess J  
Cortagine: Behavioral and Autonomic Function of the Selective CRF Receptor Subtype 1 Agonist.
CNS Drug Rev. 2007 Winter;13(4):423-43.
PMID: 18078427 [PubMed - In-Data-Review]

Choi H, Ghosh D, Nesvizhskii AI  
Statistical Validation of Peptide Identifications in Large-Scale Proteomics Using the Target-Decoy Database Search Strategy and Flexible Mixture Modeling.
J Proteome Res. 2007 Dec 14;.
PMID: 18078310 [PubMed - Publisher]

[Natriuretic peptides]
Biomed Khim. 2007 Sep-Oct;53(5):476-87.
PMID: 18078063 [PubMed - In-Process]

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Posts: 221
Merchant ML, Klein JB  
 Proteomics and diabetic nephropathy.
Semin Nephrol. 2007 Nov;27(6):627-36.

Birrer MJ, Kohn EC, Azad N, Annunziata C, Dhamoon AS, Whiteley G  
Proteomics as a tool for biomarker discovery.
Dis Markers. 2007;23(5-6):411-7.

Schilder RJ, Marden JH  
Parasites, proteomics and performance: effects of gregarine gut parasites on dragonfly flight muscle composition and function.
J Exp Biol. 2007 Dec;210(Pt 24):4298-306.

Pfeifer N, Leinenbach A, Huber CG, Kohlbacher O  
Statistical learning of peptide retention behavior in chromatographic separations: A new kernel-based approach for computational proteomics.
BMC Bioinformatics. 2007 Nov 30;8(1):468.

Kim I, Yun H, Jin I  
Comparative proteomic analyses of the yeast Saccharomyces cerevisiae KNU5377 strain against menadione-induced oxidative stress.
J Microbiol Biotechnol. 2007 Feb;17(2):207-17.

Lee SY, Jeoung D  
The reverse proteomics for identification of tumor antigens.
J Microbiol Biotechnol. 2007 Jun;17(6):879-90.

Bridges SM, Magee GB, Wang N, Williams WP, Burgess SC, Nanduri B  
ProtQuant: a tool for the label-free quantification of MudPIT proteomics data.
BMC Bioinformatics. 2007 Nov 1;8 Suppl 7:S24.

Tiss A, Smith C, Camuzeaux S, Kabir M, Gayther S, Menon U, Waterfield M, Timms J, Jacobs I, Cramer R  
Serum Peptide Profiling using MALDI Mass Spectrometry: avoiding the Pitfalls of Coated Magnetic Beads using Well-established ZipTip Technology.
Proteomics. 2007 Sep;7 Suppl 1:77-89.

Tripet B, Renuka Jayadev M, Blow D, Nguyen C, Hodges R, Cios K  
Proteomic data mining using predicted peptide chromatographic retention times.
Int J Bioinform Res Appl. 2007;3(4):431-45.

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Posts: 221
Gortzak-Uzan L, Ignatchenko A, Evangelou AI, Agochiya M, Brown KA, St Onge P, Kireeva I, Schmitt-Ulms G, Brown TJ, Murphy J, Rosen B, Shaw P, Jurisica I, Kislinger T
A Proteome Resource of Ovarian Cancer Ascites: Integrated Proteomic and Bioinformatic Analyses To Identify Putative Biomarkers.
J Proteome Res. 2007 Dec 13;.
PMID: 18076136 [PubMed - Publisher]

Giusti L, Iacconi P, Ciregia F, Giannaccini G, Basolo F, Donatini G, Miccoli P, Lucacchini A  
Proteomic analysis of human thyroid fine needle aspiration fluid.
J Endocrinol Invest. 2007 Nov;30(10):865-9.

Skold K, Svensson M, Norrman M, Sjogren B, Svenningsson P, Andren PE  
The significance of biochemical and molecular sample integrity in brain proteomics and peptidomics: Stathmin 2-20 and peptides as sample quality indicators.
Proteomics. 2007 Dec 10;7(24):4445-4456.

Seliger B, Dressler SP, Lichtenfels R, Kellner R  
Candidate biomarkers in renal cell carcinoma.
Proteomics. 2007 Dec 10;7(24):4601-4612.

Farrokhi N, Whitelegge JP, Brusslan JA  
Plant peptides and peptidomics.
Plant Biotechnol J. 2007 Dec 6;.
PMID: 18069950 [PubMed - Publisher]

Thon JN, Schubert P, Duguay M, Serrano K, Lin S, Kast J, Devine DV  
Comprehensive proteomic analysis of protein changes during platelet storage requires complementary proteomic approaches.
Transfusion. 2007 Dec 7;.
PMID: 18067510 [PubMed - Publisher]

Nice EC  
4th International Peptide Symposium in conjunction with the 7th Australian Peptide Symposium and the 2nd Asia-Pacific International Peptide Symposium.
Expert Rev Proteomics. 2007 Dec;4(6):705-7.

Choi H, Nesvizhskii AI  
False Discovery Rates and Related Statistical Concepts in Mass Spectrometry-Based Proteomics.
J Proteome Res. 2007 Dec 8;.
PMID: 18067251 [PubMed - Publisher]

Ekman M, Tollback P, Bergman B  
Proteomic analysis of the cyanobacterium of the Azolla symbiosis: identity, adaptation, and NifH modification.
J Exp Bot. 2007 Dec 7;.
PMID: 18065763 [PubMed - Publisher]

Sevinsky JR, Cargile BJ, Bunger MK, Meng F, Yates NA, Hendrickson RC, Stephenson Jr JL  
Whole Genome Searching with Shotgun Proteomic Data: Applications for Genome Annotation.
J Proteome Res. 2007 Dec 7;.
PMID: 18062665 [PubMed - Publisher]

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Posts: 221
Choi H, Nesvizhskii AI  
Semisupervised Model-Based Validation of Peptide Identifications in Mass Spectrometry-Based Proteomics.
J Proteome Res. 2007 Dec 27;.
PMID: 18159924 [PubMed - Publisher]


Jutras I, Houde M, Currier N, Boulais J, Duclos S, Laboissiere S, Bonneil E, Kearney P, Thibault P, Paramithiotis E, Hugo P, Desjardins M  
Modulation of the phagosome proteome by interferon-gamma.
Mol Cell Proteomics. 2007 Dec 21;.
PMID: 18156134 [PubMed - Publisher]

Zolotarjova N, Mrozinski P, Chen H, Martosella J  RelatedArticles
Combination of affinity depletion of abundant proteins and reversed-phase fractionation in proteomic analysis of human plasma/serum.
J Chromatogr A. 2007 Dec 4;.
PMID: 18154976 [PubMed - Publisher]

Santander SP, Cuellar A, Thomas Mdel C, Guzman F, Gomez A, Lopez MC, Puerta C
[Expression of markers on dendritic cells from chronic chagasic patients stimulated with the KMP-11 protein and the K1 peptide from Trypanosoma cruzi]
Biomedica. 2007 Jan;27 Suppl 1:18-27.


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Posts: 221
Matt P, Fu Z, Fu Q, Van Eyk JE  
Biomarker Discovery: Proteome Fractionation and Separation in Biological Samples.
Physiol Genomics. 2007 Dec 27;.
PMID: 18162500 [PubMed - Publisher]

Angulo Y, Escolano J, Lomonte B, Gutierrez JM, Sanz L, Calvete JJ
Snake Venomics of Central American Pitvipers: Clues for Rationalizing the Distinct Envenomation Profiles of Atropoides nummifer and Atropoides picadoi.
J Proteome Res. 2007 Dec 28;.
PMID: 18161938 [PubMed - Publisher]

Choi H, Nesvizhskii AI  
Semisupervised Model-Based Validation of Peptide Identifications in Mass Spectrometry-Based Proteomics.
J Proteome Res. 2007 Dec 27;.
PMID: 18159924 [PubMed - Publisher]
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Posts: 221
Thompson MR, Thompson DK, Hettich RL  
Systematic Assessment of the Benefits and Caveats in Mining Microbial Post-Translational Modifications from Shotgun Proteomic Data: The Response of Shewanella oneidensis to Chromate Exposure.
J Proteome Res. 2008 Jan 3;.
PMID: 18171020 [PubMed - Publisher]

Colzani M, Schutz F, Potts A, Waridel P, Quadroni M  
Relative protein quantification by isobaric SILAC with immonium ion splitting (ISIS).
Mol Cell Proteomics. 2007 Dec 28;.
PMID: 18165257 [PubMed - Publisher]

de Freitas Campos C, Cole N, Dyk DV, Walsh BJ, Diakos P, Almeida D, Torrecilhas A, Laus JL, Willcox MD  
Proteomic analysis of dog tears for potential cancer markers.
Res Vet Sci. 2007 Dec 27;.
PMID: 18164356 [PubMed - Publisher]

Petyuk VA, Jaitly N, Moore RJ, Ding J, Metz TO, Tang K, Monroe ME, Tolmachev AV, Adkins JN, Belov ME, Dabney AR, Qian WJ, Camp DG 2nd, Smith RD  
Elimination of Systematic Mass Measurement Errors in Liquid Chromatography-Mass Spectrometry Based Proteomics Using Regression Models and a Priori Partial Knowledge of the Sample Content.
Anal Chem. 2007 Dec 29;.
PMID: 18163597 [PubMed - Publisher]

Matt P, Fu Z, Fu Q, Van Eyk JE  
Biomarker Discovery: Proteome Fractionation and Separation in Biological Samples.
Physiol Genomics. 2007 Dec 27;.
PMID: 18162500 [PubMed - Publisher]

Angulo Y, Escolano J, Lomonte B, Gutierrez JM, Sanz L, Calvete JJ  
Snake Venomics of Central American Pitvipers: Clues for Rationalizing the Distinct Envenomation Profiles of Atropoides nummifer and Atropoides picadoi.
J Proteome Res. 2007 Dec 28;.
PMID: 18161938 [PubMed - Publisher]

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Posts: 221
Mihailova A, Malerod H, Wilson SR, Karaszewski B, Hauser R, Lundanes E, Greibrokk T  
Improving the resolution of neuropeptides in rat brain with on-line HILIC-RP compared to on-line SCX-RP.
J Sep Sci. 2008 Feb 11;31(3):459-467.

Saz JM, Marina ML  
Application of micro- and nano-HPLC to the determination and characterization of bioactive and biomarker peptides.
J Sep Sci. 2008 Feb 11;31(3):446-458.

Boonen K, Landuyt B, Baggerman G, Husson SJ, Huybrechts J, Schoofs L  
Peptidomics: The integrated approach of MS, hyphenated techniques and bioinformatics for neuropeptide analysis.
J Sep Sci. 2008 Feb 11;31(3):427-445.
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